STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0875PFAM: CopG domain protein DNA-binding domain protein; KEGG: cps:CPS_1577 hypothetical protein. (89 aa)    
Predicted Functional Partners:
fur
PFAM: ferric-uptake regulator; KEGG: vpa:VP0833 ferric uptake regulatory protein; Belongs to the Fur family.
      0.889
Ping_0874
Flavodoxin; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.
 
  
 0.879
seqA
Negative regulator of replication initiation SeqA; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated.
 
    0.807
Ping_1081
PFAM: Uncharacterized lipoprotein; KEGG: cps:CPS_0710 putative lipoprotein.
  
    0.775
Ping_0347
Acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: vfi:VF2557 acetolactate synthase small subunit.
  
     0.760
Ping_2268
PFAM: protein of unknown function DUF1414; KEGG: pha:PSHAa1818 hypothetical protein; Belongs to the UPF0352 family.
  
    0.748
Ping_1986
PFAM: protein of unknown function UPF0227; KEGG: vfi:VF1142 hypothetical protein.
  
     0.656
xni
5'-3' exonuclease; Has flap endonuclease activity. During DNA replication, flap endonucleases cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment.
  
     0.634
Ping_0876
KEGG: son:SO2332 hypothetical protein.
       0.591
priB
Restart primosome assembly protein PriB; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
  
     0.585
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.