STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0883PFAM: HipA domain protein; KEGG: vch:VC0815 hypothetical protein. (457 aa)    
Predicted Functional Partners:
Ping_0884
PFAM: helix-turn-helix domain protein; KEGG: vvy:VV0797 predicted transcriptional regulator.
   
 
 0.985
Ping_0302
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: shm:Shewmr7_3944 transcriptional regulator, XRE family.
 
 
 0.580
Ping_0147
Predicted DNA-binding transcriptional regulator, helix-turn-helix domain protein; PFAM: helix-turn-helix domain protein; KEGG: vpa:VP1073 putative immunity repressor protein.
  
 
 0.480
Ping_2553
SMART: helix-turn-helix domain protein; KEGG: ppr:PBPRA1807 putative transcriptional regulator.
  
 
 0.480
Ping_2727
PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: ppr:PBPRB1321 putative transcriptional regulator, HTH_3family.
  
 
 0.480
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.