STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0888PFAM: Rhomboid family protein; KEGG: cps:CPS_2148 membrane protein, Rhomboid family. (186 aa)    
Predicted Functional Partners:
Ping_0105
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
     0.770
Ping_0101
KEGG: cps:CPS_4587 general secretion pathway protein H.
 
     0.746
Ping_0096
TIGRFAM: general secretion pathway protein C; PFAM: PDZ/DHR/GLGF domain protein; KEGG: sfr:Sfri_0104 general secretion pathway protein C.
 
     0.742
Ping_0107
PFAM: type II secretion system protein N; KEGG: ppr:PBPRA3471 hypothetical general secretion pathway protein N.
 
     0.741
Ping_0102
TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: eca:ECA3104 general secretion pathway protein I.
 
     0.740
Ping_0103
TIGRFAM: general secretion pathway protein J; KEGG: ppr:PBPRA3475 putative Type II secretory pathway, component EpsJ.
 
     0.694
Ping_0106
General secretion pathway M protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
     0.692
Ping_3241
N-acetylmuramoyl-L-alanine amidase; PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: ppr:PBPRA3353 putative N-acetylmuramoyl-L-alanine amidase.
  
   0.684
Ping_2266
KEGG: pat:Patl_3377 hypothetical protein.
 
     0.663
Ping_1493
PFAM: regulatory protein, TetR; KEGG: cps:CPS_0335 transcriptional regulator, TetR family.
  
     0.631
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.