Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ping_0929Bacterioferritin comigratory protein (Bcp); PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pat:Patl_2480 redoxin. (158 aa)    
Predicted Functional Partners:
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
   
   0.820
Ping_0930
PFAM: UspA domain protein; KEGG: ppr:PBPRA1839 putative universal stress protein family.
     
 0.770
Ping_1624
Putative ATPase; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
  
 0.588
Ping_2209
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: vfi:VF0902 thioredoxin reductase.
  
  
 0.585
Ping_1440
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.570
Ping_2905
Fused nitric oxide dioxygenase and dihydropteridine reductase; PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bca:BCE1571 flavohemoprotein; Belongs to the globin family.
      
 0.540
Ping_0931
PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: vpa:VP1536 fumarate and nitrate reduction regulatory protein.
  
  
 0.515
Ping_3607
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: ppr:PBPRB1491 putative suppressor for copper-sensitivity B precursor.
     
 0.514
Ping_2596
KEGG: pca:Pcar_2588 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase, class IV.
  
    0.477
Ping_3190
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: ppr:PBPRA3541 putative thioredoxin; Belongs to the thioredoxin family.
  
 
 0.461
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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