STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0944PFAM: protein of unknown function DUF692; KEGG: ppr:PBPRA3516 hypothetical protein; Belongs to the UPF0276 family. (284 aa)    
Predicted Functional Partners:
Ping_0942
KEGG: vpa:VP3016 hypothetical protein.
 
  
 0.986
Ping_0945
KEGG: vvy:VV3193 putative signal peptide protein.
 
  
 0.985
Ping_0941
PFAM: DoxX family protein; KEGG: ppr:PBPRA3518 putative transmembrane protein.
 
  
 0.955
Ping_2353
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: dps:DP0307 probable cation-transporting ATPase.
   
    0.559
Ping_2670
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: tte:TTE1213 cation transport ATPase.
   
    0.559
Ping_0248
PFAM: PKD domain containing protein; Hemolysin-type calcium-binding region; Thrombospondin type 3 repeat; Fibronectin, type III domain protein; KEGG: son:SO4025 OmpA-like transmembrane domain protein.
   
    0.550
Ping_0943
PFAM: Allergen V5/Tpx-1 family protein; KEGG: ana:all1882 unknown protein.
       0.527
Ping_0946
RNA polymerase, sigma-24 subunit, ECF subfamily protein; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: pha:PSHAa0959 RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.406
Ping_0947
KEGG: ppr:PBPRA0959 hypothetical protein.
  
    0.406
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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