STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0954PFAM: UspA domain protein; KEGG: ppr:PBPRB0088 putative universal stress protein A. (142 aa)    
Predicted Functional Partners:
zapB
Hypothetical protein DUF904; Non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.
  
    0.703
lapA
Hypothetical protein DUF1049; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.539
Ping_0715
KEGG: eca:ECA1027 hypothetical protein; Belongs to the UPF0325 family.
  
    0.524
Ping_3613
PFAM: porin, Gram-negative type; KEGG: vvu:VV20580 outer membrane protein.
  
     0.516
Ping_3453
KEGG: son:SO3779 ABC transporter, ATP-binding protein CydC; TIGRFAM: ABC transporter, transmembrane region, type 1; PFAM: ABC transporter related; SMART: AAA ATPase.
  
     0.512
Ping_0179
PFAM: SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: eca:ECA3587 putative membrane protein.
 
    0.509
Ping_0288
TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: yps:YPTB0844 putative sigma 54 modulation protein.
  
  
 0.505
Ping_1986
PFAM: protein of unknown function UPF0227; KEGG: vfi:VF1142 hypothetical protein.
  
     0.472
Ping_0955
PFAM: UspA domain protein; KEGG: vch:VC0076 universal stress protein A.
 
    
0.454
Ping_1556
KEGG: tbd:Tbd_1018 putative lipoprotein.
  
     0.449
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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