STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scrRTranscriptional regulator, LacI family; PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: vch:VCA0654 sucrose operon repressor ScrR, putative. (337 aa)    
Predicted Functional Partners:
Ping_1007
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ppr:PBPRA0542 putative glutamate synthase, large subunit.
    
 
 0.817
Ping_2909
Transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein, LacI; KEGG: hch:HCH_04796 transcriptional regulator.
  
     0.774
Ping_0974
Beta-fructofuranosidase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
  
 0.581
Ping_0972
Sucrose PTS system EIIBCA or EIIBC component; TIGRFAM: PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, sucrose-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: vch:VCA0653 PTS system, sucrose-specific IIBC component; TC 4.A.1.2.12; TC 4.A.1.2.12.
    
 0.511
Ping_0971
Fructokinase; PFAM: PfkB domain protein; KEGG: vch:VCA0656 fructokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.479
Ping_3551
TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: ppr:PBPRA1573 putative PTS system, fructose-specific IIA/FPR component; TC 4.A.2.1.1.
   
 
 0.406
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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