Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Ping_1011 | Ping_1012 | PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cps:CPS_4136 transporter, LysE family. | PFAM: regulatory protein, LysR; KEGG: cps:CPS_4135 chromosome initiation inhibitor; Belongs to the LysR transcriptional regulatory family. | 0.898 |
Ping_1011 | Ping_1103 | PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cps:CPS_4136 transporter, LysE family. | PFAM: SEC-C motif domain protein; KEGG: vpa:VP1145 hypothetical protein. | 0.421 |
Ping_1011 | Ping_2647 | PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cps:CPS_4136 transporter, LysE family. | PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_3391 membrane protein. | 0.496 |
Ping_1012 | Ping_1011 | PFAM: regulatory protein, LysR; KEGG: cps:CPS_4135 chromosome initiation inhibitor; Belongs to the LysR transcriptional regulatory family. | PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cps:CPS_4136 transporter, LysE family. | 0.898 |
Ping_1012 | Ping_2647 | PFAM: regulatory protein, LysR; KEGG: cps:CPS_4135 chromosome initiation inhibitor; Belongs to the LysR transcriptional regulatory family. | PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_3391 membrane protein. | 0.507 |
Ping_1103 | Ping_1011 | PFAM: SEC-C motif domain protein; KEGG: vpa:VP1145 hypothetical protein. | PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cps:CPS_4136 transporter, LysE family. | 0.421 |
Ping_2647 | Ping_1011 | PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_3391 membrane protein. | PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cps:CPS_4136 transporter, LysE family. | 0.496 |
Ping_2647 | Ping_1012 | PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_3391 membrane protein. | PFAM: regulatory protein, LysR; KEGG: cps:CPS_4135 chromosome initiation inhibitor; Belongs to the LysR transcriptional regulatory family. | 0.507 |