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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1075TIGRFAM: lytic murein transglycosylase; KEGG: ilo:IL1824 membrane-bound lytic murein transglycosylase. (349 aa)    
Predicted Functional Partners:
Ping_2366
PFAM: Aldose 1-epimerase; KEGG: vfi:VF0912 aldose 1-epimerase-like protein; Belongs to the glucose-6-phosphate 1-epimerase family.
 
      0.899
Ping_1074
PFAM: protein of unknown function UPF0153; KEGG: sdn:Sden_1632 uncharacterised conserved protein UCP006173; Belongs to the UPF0260 family.
     0.890
Ping_1076
PFAM: protein of unknown function DUF709; KEGG: sdn:Sden_1630 protein of unknown function DUF709.
       0.800
minC
Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.
       0.592
Ping_1078
TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pha:PSHAb0506 cell division inhibitor, membrane ATPase, activates MinC.
       0.586
minE
Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
       0.586
Ping_1402
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ppr:PBPRB0628 hypothetical fumarylacetoacetate hydrolase family protein.
      0.554
mrdA
Cell elongation-specific peptidoglycan D,D-transpeptidase; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
 
 
 
 0.526
Ping_0106
General secretion pathway M protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
     0.492
Ping_3027
Penicillin-binding protein 6, Serine peptidase, MEROPS family S11; PFAM: beta-lactamase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: vpa:VP0719 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
   
 0.486
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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