STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1127KEGG: ppr:PBPRA3265 hypothetical membrane protein. (1294 aa)    
Predicted Functional Partners:
Ping_0858
PFAM: protein of unknown function DUF526; KEGG: ppr:PBPRA0086 hypothetical protein.
  
     0.713
Ping_0497
PFAM: Methyltransferase type 11; KEGG: pha:PSHAa1965 S-adenosyl-L-methionine-dependent methyltransferase.
  
     0.685
smg
PFAM: protein of unknown function DUF494; KEGG: ilo:IL0020 hypothetical protein; Belongs to the Smg family.
  
     0.678
Ping_1124
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
 
     0.678
ftsQ
Cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly.
  
     0.675
Ping_1128
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: vfi:VF0378 beta-ureidopropionase.
 
     0.667
Ping_1129
Microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62; PFAM: peptidase U62, modulator of DNA gyrase; KEGG: vch:VC0422 TldD protein.
 
   
 0.666
Ping_1126
TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: vpa:VP2687 cytoplasmic axial filament protein.
  
    0.660
Ping_2268
PFAM: protein of unknown function DUF1414; KEGG: pha:PSHAa1818 hypothetical protein; Belongs to the UPF0352 family.
  
     0.640
Ping_3310
PFAM: protein of unknown function DUF412; KEGG: yps:YPTB2595 hypothetical protein.
  
     0.618
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.