STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1174PFAM: transport-associated; KEGG: pha:PSHAa2525 hypothetical protein. (189 aa)    
Predicted Functional Partners:
Ping_1175
DnaA-interacting protein DiaA; TIGRFAM: phosphoheptose isomerase; KEGG: plu:plu4004 hypothetical protein.
  
    0.857
Ping_1177
PFAM: LppC family lipoprotein; KEGG: ppr:PBPRA3227 hypothetical lipoprotein.
  
    0.816
Ping_1176
PFAM: protein of unknown function UPF0102; KEGG: pfo:Pfl_4685 protein of unknown function UPF0102; Belongs to the UPF0102 family.
       0.806
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.655
bamD
Putative lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.468
bamE
Outer membrane lipoprotein OmlA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.459
Ping_1131
PFAM: protein of unknown function DUF615; KEGG: hdu:HD1362 hypothetical protein; Belongs to the UPF0307 family.
  
    0.449
Ping_2256
PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: vfi:VF0819 succinate dehydrogenase cytochrome b556 subunit.
  
     0.437
Ping_0269
KEGG: vpa:VPA1132 hypothetical protein.
  
     0.422
Ping_2200
Integral inner membrane protein UPF0005; PFAM: protein of unknown function UPF0005; KEGG: cps:CPS_2350 putative membrane protein; Belongs to the BI1 family.
  
     0.422
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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