STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1214KEGG: mca:MCA0113 HoxW protein. (178 aa)    
Predicted Functional Partners:
Ping_1215
NAD(P)-dependent nickel-iron dehydrogenase catalytic subunit; PFAM: nickel-dependent hydrogenase, large subunit; KEGG: mca:MCA0114 NAD-reducing hydrogenase, beta subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
  
 0.920
Ping_1216
Hydrogen dehydrogenase; PFAM: ferredoxin; NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: mca:MCA2725 NAD-reducing hydrogenase, gamma subunit.
 
  
 0.904
Ping_1217
NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: mca:MCA2724 NAD-reducing hydrogenase, alpha subunit.
 
   
 0.898
hypA
Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
  
 0.897
Ping_1211
TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: sma:SAV7376 putative hydrogenase expression/formation protein.
 
  
 0.868
hypB
GTP hydrolase, accessory liganding Ni into hydrogenases, HypB; TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: rfr:Rfer_4096 hydrogenase accessory protein HypB.
 
  
 0.853
Ping_1207
PFAM: hydrogenase formation HypD protein; KEGG: gme:Gmet_0117 hydrogenase formation HypD protein; Belongs to the HypD family.
 
   
 0.793
Ping_1210
TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: cte:CT1792 hydrogenase expression/formation protein HypE.
 
   
 0.791
Ping_1209
PFAM: formyl transferase domain protein; KEGG: aae:aq_1156 hydrogenase regulation HoxX.
 
     0.770
Ping_1208
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rme:Rmet_1541 formyl transferase-like protein; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.655
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.