STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1217NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: mca:MCA2724 NAD-reducing hydrogenase, alpha subunit. (588 aa)    
Predicted Functional Partners:
Ping_1359
Multicomponent K+:H+ antiporter subunit A; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); Na+/H+ antiporter MnhB subunit-related protein; KEGG: hch:HCH_00804 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, MnhA subunit; TC 2.A.63.1.1; TC 2.A.63.1.1.
  
 
 0.999
napF
Periplasmic nitrate reductase maturation protein NapF; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family.
  
 0.999
Ping_2872
PFAM: cytochrome c1; KEGG: vfi:VF2217 cytochrome C1.
   
 
 0.999
Ping_1008
TIGRFAM: glutamate synthases, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: vch:VC2374 glutamate synthase, small subunit.
 
 
 0.998
Ping_1216
Hydrogen dehydrogenase; PFAM: ferredoxin; NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: mca:MCA2725 NAD-reducing hydrogenase, gamma subunit.
 
 
 
 0.998
Ping_2717
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.998
petA
Ubiquinol-cytochrome c reductase iron-sulfur subunit PetA; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
   
 
 0.998
sucA
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: pat:Patl_1798 succinate dehydrogenase and fumarate reductase iron-sulfur protein.
   
 
 0.997
Ping_3279
KEGG: cvi:CV3368 fumarate reductase, subunit B; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
   
 
 0.997
Ping_1716
NmrA family protein; PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: eca:ECA0923 hypothetical protein.
   
 0.995
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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