STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1245Two component, sigma54 specific, transcriptional regulator, Fis family protein; PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: bba:Bd1513 regulator protein PilR. (472 aa)    
Predicted Functional Partners:
Ping_1250
KEGG: mxa:MXAN_6865 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 
 
 0.873
Ping_3487
PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: vpa:VP0119 nitrogen regulation protein.
 
 0.806
Ping_2892
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.803
Ping_1246
KEGG: mxa:MXAN_2774 heat shock protein, HSP20 family; Belongs to the small heat shock protein (HSP20) family.
       0.741
Ping_1746
KEGG: mxa:MXAN_6865 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 
 
 0.727
Ping_2024
KEGG: mag:amb2165 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 
 0.654
Ping_1251
PFAM: response regulator receiver; KEGG: det:DET1294 DNA-binding response regulator.
 
    
0.620
Ping_1249
PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: mxa:MXAN_2771 gas vesicle protein, GvpL/GvpF family.
 
     0.616
Ping_1248
PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: mxa:MXAN_2772 gas vesicle protein, GvpL/GvpF family.
 
     0.609
Ping_2805
Sensor histidine kinase/response regulator fused protein, ATPase domain protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pmu:PM1380 hybrid histidine protein kinase-phosphate acceptor regulatory protein.
 
 
 0.588
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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