STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1284PFAM: Hemerythrin HHE cation binding domain protein; KEGG: vpa:VP0501 hypothetical protein. (179 aa)    
Predicted Functional Partners:
ung
Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
       0.642
Ping_0833
KEGG: sdn:Sden_1544 hypothetical protein.
  
     0.575
Ping_3217
PFAM: protein of unknown function DUF416; KEGG: sbo:SBO_4020 hypothetical protein.
  
     0.499
Ping_1166
Type IV pilus biogenesis/stability protein PilW; KEGG: ppr:PBPRA0761 hypothetical fimbrial biogenesis and twitching motility protein; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
     0.498
Ping_1474
PFAM: porin, Gram-negative type; KEGG: vvy:VV2720 outer membrane protein OmpU.
  
     0.490
Ping_3613
PFAM: porin, Gram-negative type; KEGG: vvu:VV20580 outer membrane protein.
  
     0.485
pilP
Type IV pilus biogenesis protein PilP; PFAM: Pilus assembly protein, PilQ; KEGG: sfr:Sfri_0373 pilus assembly protein, PilQ.
  
     0.476
pilO
PFAM: Pilus assembly protein, PilO; KEGG: sdn:Sden_0258 pilus assembly protein, PilO.
  
     0.469
Ping_3016
KEGG: vfi:VF1816 cytochrome c-type biogenesis protein CcmI.
  
     0.443
Ping_0159
PFAM: Fimbrial assembly family protein; KEGG: sfr:Sfri_0371 fimbrial assembly family protein.
  
     0.420
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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