STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1298Nucleoside ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_CH00188 probable sugar ABC transporter, ATP-binding protein. (523 aa)    
Predicted Functional Partners:
Ping_1299
Nucleoside ABC transporter membrane protein; PFAM: inner-membrane translocator; KEGG: hch:HCH_02311 ABC-type uncharacterized transport system, permease component.
 
 0.998
Ping_1300
Nucleoside ABC transporter membrane protein; PFAM: inner-membrane translocator; KEGG: mes:Meso_3654 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
Ping_1297
PFAM: basic membrane lipoprotein; KEGG: hch:HCH_02309 uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein.
 
 0.995
Ping_2807
PFAM: inner-membrane translocator; KEGG: mlo:mll3597 ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.611
Ping_0342
PFAM: inner-membrane translocator; KEGG: ppr:PBPRB1558 putative ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.580
Ping_1301
PFAM: peptidase U32; KEGG: ppr:PBPRA1758 putative collagenase family protease.
     
 0.576
Ping_2867
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
 
  
 0.411
Ping_0704
PFAM: protein of unknown function RIO1; protein kinase; protein phosphatase 2C domain protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: dar:Daro_0820 protein kinase:protein phosphatase 2C-like.
  
    0.402
Ping_1021
PFAM: protein kinase; SMART: tyrosine protein kinase; protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: ppr:PBPRA2520 hypothetical protein.
  
    0.402
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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