STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ping_1300Nucleoside ABC transporter membrane protein; PFAM: inner-membrane translocator; KEGG: mes:Meso_3654 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (321 aa)    
Predicted Functional Partners:
Ping_1298
Nucleoside ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_CH00188 probable sugar ABC transporter, ATP-binding protein.
 
 0.998
Ping_1299
Nucleoside ABC transporter membrane protein; PFAM: inner-membrane translocator; KEGG: hch:HCH_02311 ABC-type uncharacterized transport system, permease component.
 
0.998
Ping_1297
PFAM: basic membrane lipoprotein; KEGG: hch:HCH_02309 uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein.
 
 
 0.988
Ping_2808
Monosaccharide ABC transporter ATP-binding protein, CUT2 family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcn:Bcen_1063 ABC transporter related; TC 3.A.1.2.-.
   
 0.662
Ping_2787
Monosaccharide ABC transporter ATP-binding protein, CUT2 family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK3228 ribose ABC transporter (ATP-binding protein); TC 3.A.1.2.-.
   
 0.615
rbsA
Ribose ABC transporter ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
   
 0.592
Ping_2862
2-deoxyribose-5-phosphate aldolase, NAD(P)-linked; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
 
  
 0.418
Ping_1301
PFAM: peptidase U32; KEGG: ppr:PBPRA1758 putative collagenase family protease.
       0.410
deoA
Thymidine phosphorylase; The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family.
 
   
 0.400
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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