STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1301PFAM: peptidase U32; KEGG: ppr:PBPRA1758 putative collagenase family protease. (748 aa)    
Predicted Functional Partners:
Ping_1217
NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: mca:MCA2724 NAD-reducing hydrogenase, alpha subunit.
   
   0.889
Ping_2717
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
   0.808
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
     
 0.666
Ping_1298
Nucleoside ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_CH00188 probable sugar ABC transporter, ATP-binding protein.
     
 0.576
napF
Periplasmic nitrate reductase maturation protein NapF; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family.
  
   0.547
Ping_2067
PFAM: Sterol-binding domain protein; KEGG: vvy:VV2689 putative lipid carrier protein.
 
  
 0.524
Ping_2404
PFAM: metal-dependent protein hydrolase; KEGG: cps:CPS_2163 hypothetical protein.
 
     0.477
Ping_0207
KEGG: vfi:VF0080 coproporphyrinogen oxidase, anaerobic; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
    0.415
Ping_1299
Nucleoside ABC transporter membrane protein; PFAM: inner-membrane translocator; KEGG: hch:HCH_02311 ABC-type uncharacterized transport system, permease component.
       0.410
Ping_1300
Nucleoside ABC transporter membrane protein; PFAM: inner-membrane translocator; KEGG: mes:Meso_3654 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.410
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.