STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ping_1313TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: mag:amb3451 response regulator containing a CheY-like receiver domain and a GGDEF domain. (543 aa)    
Predicted Functional Partners:
Ping_0978
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: tte:TTE1717 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain.
 
    0.898
Ping_3093
PFAM: EAL domain protein; KEGG: pha:PSHAa2203 hypothetical protein.
  
  
 0.765
Ping_2025
PFAM: EAL domain protein; response regulator receiver; KEGG: mag:amb3312 PvrR.
  
    0.725
Ping_1204
KEGG: tdn:Tmden_1941 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; domain of unknown function DUF1745; PAS fold domain protein; SMART: PAC repeat-containing protein.
 
 
 0.699
Ping_2138
PFAM: EAL domain protein; KEGG: pol:Bpro_2469 response regulator receiver (CheY-like) modulated diguanylate phosphodiesterase (EAL domain).
  
    0.698
Ping_1203
KEGG: tdn:Tmden_1941 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; domain of unknown function DUF1745; PAS fold domain protein; SMART: PAC repeat-containing protein.
 
 
 0.691
Ping_1202
KEGG: tdn:Tmden_1941 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; domain of unknown function DUF1745; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 
 0.687
Ping_0483
PFAM: EAL domain protein; response regulator receiver; KEGG: nmu:Nmul_A1555 response regulator receiver (CheY-like) modulated diguanylate phosphodiesterase (EAL domain).
 
    0.683
Ping_2197
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: pha:PSHAa1106 hypothetical protein.
  
  
 0.679
Ping_1312
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; KEGG: ret:RHE_PC00149 putative sugar ABC transporter, substrate-binding protein; TC 3.A.1.2.-.
       0.661
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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