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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1393TIGRFAM: integron integrase; PFAM: phage integrase family protein; KEGG: vch:VCA0291 site-specific recombinase IntI4; Belongs to the 'phage' integrase family. (324 aa)    
Predicted Functional Partners:
Ping_1900
PFAM: phage integrase family protein; KEGG: psp:PSPPH_2410 site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family.
 
 
 
 0.723
Ping_0399
PFAM: phage integrase family protein; KEGG: lpp:lpp2123 hypothetical protein; Belongs to the 'phage' integrase family.
  
   
 0.477
xerC
Tyrosine recombinase XerC subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
 
 
0.471
Ping_1395
KEGG: pca:Pcar_0534 transposase IS4 family.
 
     0.454
Ping_0287
TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; Prephenate dehydrogenase; KEGG: vfi:VF0554 chorismate mutase.
 
    0.443
Ping_3201
KEGG: vvu:VV10863 predicted amidophosphoribosyltransferase.
   
    0.443
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.420
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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