Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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Score
Ping_1420TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: ppr:PBPRA1409 conserved hypothetical iron-sulphur protein. (486 aa)    
Predicted Functional Partners:
Ping_1421
PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: ppr:PBPRA1410 hypothetical protein.
 
 0.995
Ping_1690
Glycolate oxidase-like protein; PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: rde:RD1_0073 hypothetical protein.
 
 0.991
Ping_1419
PFAM: protein of unknown function DUF162; KEGG: ppr:PBPRA1408 hypothetical protein.
 
 
 0.987
Ping_1692
PFAM: protein of unknown function DUF162; KEGG: rde:RD1_0071 hypothetical protein.
 
 
 0.946
Ping_1418
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: ppr:PBPRA1407 putative ferredoxin.
 
 
 0.899
Ping_1450
PFAM: FAD linked oxidase domain protein; KEGG: ppr:PBPRA1294 hypothetical Fe-S oxidoreductase.
  
 
 0.744
Ping_1422
L-lactate transport; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
   
 0.587
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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