STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1516TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_405 probable permease of ABC transporter; TC 3.A.1.3.-. (223 aa)    
Predicted Functional Partners:
Ping_1514
Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_L_402 probable ATP-binding component of ABC transporter; TC 3.A.1.3.-.
 
 0.996
Ping_1515
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_403 probable permease of ABC transporter; TC 3.A.1.3.-.
 
 
 
0.984
Ping_1517
PFAM: extracellular solute-binding protein, family 3; KEGG: atc:AGR_L_407 probable binding protein component of ABC transporter; TC 3.A.1.3.-.
 
  0.958
Ping_1920
Amino acid ABC transporter substrate-binding protein, PAAT family; PFAM: extracellular solute-binding protein, family 3; KEGG: vfi:VF0008 cystine-binding protein; TC 3.A.1.3.-; Belongs to the bacterial solute-binding protein 3 family.
   0.880
Ping_0412
L-arginine ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1463 polar amino acid transport system ATP-binding protein.
 
 
 0.870
Ping_1918
Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csa:Csal_2602 ABC transporter related; TC 3.A.1.3.-.
 
 
 0.867
Ping_2429
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: yps:YPTB0869 putative amino acid ABC transporter, ATP-binding protein; TC 3.A.1.3.-.
 
 
 0.867
Ping_2821
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vfi:VF1535 general L-amino acid transport ATP-binding protein AapP; TC 3.A.1.3.-.
 
 
 0.858
Ping_2825
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vvy:VV1554 ABC-type polar amino acid transport system, ATPase component; TC 3.A.1.3.-.
 
 
 0.858
Ping_0296
PFAM: extracellular solute-binding protein, family 3; KEGG: vpa:VPA0637 arginine ABC transporter, periplasmic arginine-binding protein; TC 3.A.1.3.-; Belongs to the bacterial solute-binding protein 3 family.
   0.799
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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