Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1523PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_2675 initiation factor 2. (411 aa)    
Predicted Functional Partners:
Ping_3073
Transcriptional regulator, TraR/DksA family protein; KEGG: rsp:RSP_4199 putative DnaK suppressor protein.
 
     0.517
Ping_2134
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: vpa:VP0112 methyltransferase-related protein.
  
     0.454
Ping_1524
KEGG: ilo:IL2326 hypothetical protein.
       0.407
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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