Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Ping_1551PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: son:SO4169 hypothetical protein. (516 aa)    
Predicted Functional Partners:
Ping_1549
Deoxyribodipyrimidine photo-lyase family protein (cryptochrome); PFAM: DNA photolyase, FAD-binding; KEGG: pat:Patl_0151 deoxyribodipyrimidine photolyase.
 
   
 0.896
Ping_1548
Deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific); KEGG: pat:Patl_0152 deoxyribodipyrimidine photolyase; TIGRFAM: DNA photolyase, FAD- binding- domain protein; PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein.
 
   
 0.831
Ping_1550
KEGG: pcr:Pcryo_0448 hypothetical protein.
 
     0.753
Ping_3614
Sugar nucleotide epimerase; PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: dps:DP2501 hypothetical protein.
      0.664
Ping_1001
PFAM: amine oxidase; KEGG: vfi:VFA0762 putative dehydrogenase.
 
   
 0.606
Ping_2109
KEGG: cps:CPS_0516 oxidoreductase, short-chain dehydrogenase/reductase family.
 
  
 0.606
Ping_1006
KEGG: son:SO3376 hypothetical protein.
 
     0.603
Ping_1002
PFAM: protein of unknown function DUF1365; KEGG: vfi:VFA0761 plasmid partition ParA protein.
 
   
 0.583
Ping_0999
KEGG: vfi:VFA0764 hypothetical transcriptional regulatory protein.
 
   
 0.517
Ping_2108
PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: son:SO0771 hypothetical protein.
 
     0.499
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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