STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1556KEGG: tbd:Tbd_1018 putative lipoprotein. (218 aa)    
Predicted Functional Partners:
Ping_1534
PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: mma:MM3105 putative cytosine deaminase.
  
     0.562
Ping_1555
Hypothetical protein.
       0.503
Ping_0955
PFAM: UspA domain protein; KEGG: vch:VC0076 universal stress protein A.
  
     0.471
Ping_2162
Protein containing tetratricopeptide (TPR) repeat; SMART: Tetratricopeptide domain protein; KEGG: lipoprotein, putative.
  
     0.457
Ping_0954
PFAM: UspA domain protein; KEGG: ppr:PBPRB0088 putative universal stress protein A.
  
     0.449
Ping_1289
KEGG: cps:CPS_0276 hypothetical protein.
  
     0.448
Ping_2537
Fused PAS, GGDEF domain sensor protein and response regulator; KEGG: cps:CPS_1882 sensory box sensor histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein.
  
     0.439
Ping_1774
SMART: Water Stress and Hypersensitive response; KEGG: psb:Psyr_3032 lipoprotein, putative.
  
     0.419
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.