STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1579ABC-type transporter protein; PFAM: protein of unknown function DUF214; KEGG: vvy:VV1432 ABC-type antimicrobial peptide transport system, permease component. (813 aa)    
Predicted Functional Partners:
Ping_1580
KEGG: ppr:PBPRA1555 hypothetical secreted hydrolase.
 
     0.957
Ping_1578
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pst:PSPTO_1638 ABC transporter, ATP-binding protein.
 
 
 0.943
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
 
 0.707
Ping_3710
ABC transporter foramino acid ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_3462 ABC transporter related.
  
 
 0.695
lolA
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.637
Ping_1577
PFAM: FAD dependent oxidoreductase; KEGG: ppr:PBPRB0641 hypothetical protein.
       0.524
Ping_2623
KEGG: sdn:Sden_2824 major outer membrane lipoprotein, putative.
    
 
 0.492
Ping_1581
Hypothetical protein; KEGG: son:SO2978 prophage LambdaSo, site-specific recombinase, phage integrase family.
       0.461
lolB
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
    
 
 0.433
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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