STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1580KEGG: ppr:PBPRA1555 hypothetical secreted hydrolase. (375 aa)    
Predicted Functional Partners:
Ping_1579
ABC-type transporter protein; PFAM: protein of unknown function DUF214; KEGG: vvy:VV1432 ABC-type antimicrobial peptide transport system, permease component.
 
     0.957
Ping_1578
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pst:PSPTO_1638 ABC transporter, ATP-binding protein.
 
   
 0.883
Ping_2957
PFAM: protein of unknown function DUF214; KEGG: vfi:VFA1042 ABC transporter component, lysophospholipase L1 transport.
  
  
 0.664
Ping_1577
PFAM: FAD dependent oxidoreductase; KEGG: ppr:PBPRB0641 hypothetical protein.
       0.524
Ping_1581
Hypothetical protein; KEGG: son:SO2978 prophage LambdaSo, site-specific recombinase, phage integrase family.
       0.461
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.