STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1587TIGRFAM: CRISPR-associated protein, Cse3 family; KEGG: ppr:PBPRC0039 hypothetical protein. (180 aa)    
Predicted Functional Partners:
Ping_1590
TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: ppr:PBPRC0036 hypothetical protein.
 
 
 0.993
Ping_1586
CRISPR-associated helicase, Cas3 family; KEGG: ppr:PBPRC0040 hypothetical protein; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; SMART: DEAD-like helicases-like.
 
 
 
 0.991
Ping_1589
TIGRFAM: CRISPR-associated protein, Cse4 family; KEGG: ppr:PBPRC0037 hypothetical protein.
 
 
 0.991
Ping_1588
CRISPR-associated protein, Cse2 family; KEGG: ppr:PBPRC0038 hypothetical protein.
  
 
 0.976
Ping_1591
TIGRFAM: CRISPR-associated protein, Cse1 family; KEGG: ppr:PBPRC0035 hypothetical protein.
  
 
 0.947
cas1
CRISPR-associated protein, Cas1 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.930
Ping_1593
TIGRFAM: CRISPR-associated protein Cas2; KEGG: ppr:PBPRC0033 hypothetical protein.
 
  
 0.909
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.