STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1673PFAM: peptidase C1A, papain; KEGG: dre:368704 cathepsin C. (368 aa)    
Predicted Functional Partners:
Ping_3145
ADP-ribose pyrophosphatase; PFAM: NUDIX hydrolase; KEGG: psp:PSPPH_4558 MutT domain protein-like.
  
     0.746
Ping_2723
PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: cps:CPS_4627 serine protease, trypsin family.
  
  
 0.562
Ping_1674
Hypothetical protein.
      
0.524
Ping_1672
Hypothetical protein.
      
0.513
Ping_1964
Hypothetical protein; KEGG: gme:Gmet_1851 pentapeptide repeat protein.
  
 
   0.490
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
     0.468
Ping_2690
Peptidase; KEGG: pfa:PFD0320c-1 hypothetical protein.
  
     0.434
rplT
LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
     0.403
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.