STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1689Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_4691 substrate-binding transcriptional regulator, LysR family. (300 aa)    
Predicted Functional Partners:
Ping_2316
PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ccr:CC1117 transcriptional regulator, LysR family.
  
     0.762
Ping_3660
PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: psp:PSPPH_0442 malonate utilization transcriptional regulator.
  
     0.693
Ping_2759
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sdn:Sden_2309 regulatory protein, LysR; Belongs to the LysR transcriptional regulatory family.
  
     0.669
Ping_1979
PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vch:VC1907 transcriptional regulator for cysteine regulon.
  
     0.621
Ping_0418
PFAM: regulatory protein, LysR; KEGG: gbe:GbCGDNIH1_1637 transcriptional regulators, LysR family.
  
     0.544
Ping_1690
Glycolate oxidase-like protein; PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: rde:RD1_0073 hypothetical protein.
       0.507
Ping_1691
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rde:RD1_0072 4Fe-4S binding domain protein, putative.
       0.507
Ping_1692
PFAM: protein of unknown function DUF162; KEGG: rde:RD1_0071 hypothetical protein.
       0.507
merR
PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: metR; transcriptional activator MetR.
  
     0.471
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.