STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1718KEGG: vfi:VFA1062 transporter, NRAMP family. (421 aa)    
Predicted Functional Partners:
Ping_0434
TIGRFAM: eight transmembrane protein EpsH; Eight transmembrane protein EpsH; KEGG: net:Neut_0899 eight transmembrane protein EpsH.
  
  0.505
Ping_3547
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
  
 0.453
Ping_2334
TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: tcx:Tcr_0029 sodium/sulphate symporter.
  
     0.443
Ping_3634
PFAM: permease; KEGG: sdn:Sden_0091 hypothetical protein.
 
  
 0.439
Ping_2341
TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: ppr:PBPRA1216 putative transporter.
  
     0.427
Ping_3281
Fumarate reductase, D subunit; Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane.
  
     0.418
Ping_2343
TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: vfi:VF1052 transporter, divalent anion:sodium symporter family.
  
     0.416
Ping_3280
PFAM: fumarate reductase, subunit C; KEGG: cvi:CV3367 fumarate reductase, subunit C.
  
     0.413
Ping_1719
SMART: zinc finger, CDGSH-type domain protein; KEGG: cps:CPS_2171 hypothetical protein.
       0.410
Ping_3549
Urea amidolyase related protein; KEGG: vpa:VPA0875 putative carboxylase; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2.
  
  
 0.408
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.