STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1737KEGG: pat:Patl_2035 putative cytochrome c oxidase, subunit I. (260 aa)    
Predicted Functional Partners:
Ping_1890
PFAM: MscS Mechanosensitive ion channel; KEGG: pat:Patl_0259 MscS mechanosensitive ion channel.
  
     0.548
Ping_0680
KEGG: ppr:PBPRA0701 putative type IV pilus assembly protein PilW.
  
     0.525
Ping_2065
Nucleotide phosphate derivative pyrophosphohydrolase, MutT/nudix family protein; PFAM: NUDIX hydrolase; KEGG: ngo:NGO0224 putative pyrophosphohydrolase.
  
     0.451
Ping_3228
PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; KEGG: sdn:Sden_2972 protein of unknown function DUF335, SprT; Belongs to the SprT family.
 
     0.433
Ping_0936
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
     0.422
bamC
NlpBDapX family lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.419
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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