STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1749ATP synthase B subunit (AtpF); KEGG: hsa:26064 retinoic acid induced 14. (450 aa)    
Predicted Functional Partners:
Ping_2708
KEGG: vch:VC1610 hypothetical protein.
  
     0.737
Ping_2690
Peptidase; KEGG: pfa:PFD0320c-1 hypothetical protein.
  
     0.693
Ping_2579
PFAM: Radical SAM domain protein; KEGG: vvu:VV20908 molybdenum cofactor biosynthesis enzyme.
  
     0.675
Ping_1750
KEGG: cya:CYA_0826 gas vesicle protein GvpN; TIGRFAM: gas vesicle protein GvpN; PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
       0.572
Ping_1751
Hypothetical protein.
       0.517
Ping_3145
ADP-ribose pyrophosphatase; PFAM: NUDIX hydrolase; KEGG: psp:PSPPH_4558 MutT domain protein-like.
  
     0.488
gvpA-2
Gas vesicle protein GVPa; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
       0.477
Ping_0902
PFAM: protein of unknown function DUF343; KEGG: ppr:PBPRA2383 hypothetical protein; Belongs to the UPF0434 family.
  
     0.465
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
     0.442
Ping_1620
TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hch:HCH_04101 predicted sugar phosphatase of the HAD superfamily.
  
     0.413
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.