STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1776KEGG: pol:Bpro_3282 hypothetical protein. (345 aa)    
Predicted Functional Partners:
Ping_1350
PFAM: peptidase M56, BlaR1; KEGG: noc:Noc_0291 hypothetical protein.
  
     0.655
Ping_3160
PFAM: extracellular solute-binding protein, family 5; KEGG: sil:SPO0706 oligopeptide ABC transporter, periplasmic oligopeptide-binding protein.
  
     0.619
Ping_1534
PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: mma:MM3105 putative cytosine deaminase.
 
    0.611
Ping_1267
PFAM: sodium/calcium exchanger membrane region; KEGG: rba:RB8016 probable sodium/calcium exchanger antiporter.
  
     0.591
Ping_3159
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPO0705 oligopeptide ABC transporter, permease protein.
  
     0.579
Ping_0487
PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: dvu:DVU1638 hypothetical protein.
  
     0.460
Ping_3158
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPO0704 oligopeptide ABC transporter, permease protein.
 
     0.458
Ping_1811
S-adenosylmethionine-dependent methyltransferase; KEGG: vfi:VFA0955 hypothetical protein.
  
     0.445
Ping_3182
Similar to RTX toxin; TIGRFAM: putative outer membrane adhesin like proteiin; KEGG: cch:Cag_1242 VCBS.
  
     0.439
Ping_3719
Sensor histidine kinase with ATPase domain; PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: vvy:VVA0933 signal transduction histidine kinase.
  
  
 0.436
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.