STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1808PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: cte:CT0994 cytidine and deoxycytidylate deaminase family protein. (191 aa)    
Predicted Functional Partners:
hisI
PFAM: phosphoribosyl-AMP cyclohydrolase; MazG nucleotide pyrophosphohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: ppr:PBPRA1085 putative phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase; In the N-terminal section; belongs to the PRA-CH family.
   
  
 0.879
birA
biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
  
    0.813
Ping_1902
PFAM: Inosine/uridine-preferring nucleoside hydrolase; Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: psp:PSPPH_2471 inosine-uridine preferring nucleoside hydrolase; Belongs to the IUNH family.
  
 0.664
tdk
PFAM: thymidine kinase; KEGG: son:SO3140 thymidine kinase.
    
 0.527
udk
KEGG: son:SO2617 uridine kinase; TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase.
   
 
  0.505
Ping_3621
KEGG: bce:BC3046 uridine kinase.
   
 
  0.505
Ping_2607
PFAM: nitroreductase; KEGG: csa:Csal_0202 nitroreductase; Belongs to the flavin oxidoreductase frp family.
  
  
 0.500
Ping_2868
Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the PNP/UDP phosphorylase family.
     
  0.500
ppnP
Hypothetical protein DUF1255; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
     
  0.500
Ping_1807
ATP-dependent RNA helicase, DEAD box family protein; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cps:CPS_1590 ATP-dependent RNA helicase, DEAD box family.
   
   0.467
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.