STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1809PFAM: oxidoreductase domain protein; KEGG: yps:YPTB3473 possible MocA-family oxidoreductase. (324 aa)    
Predicted Functional Partners:
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: plu:plu3548 lysyl-tRNA synthetase (lysine--tRNA ligase); Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.571
Ping_1810
PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: vch:VC2716 hypothetical protein.
       0.546
Ping_1811
S-adenosylmethionine-dependent methyltransferase; KEGG: vfi:VFA0955 hypothetical protein.
       0.543
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
 
 0.495
Ping_1812
Nucleotide phosphate derivative pyrophosphohydrolase, MutT/nudix family protein; PFAM: NUDIX hydrolase; KEGG: ppr:PBPRB0617 putative MutT/NUDIX family protein.
       0.491
Ping_3405
PFAM: aldo/keto reductase; KEGG: vch:VCA0859 oxidoreductase, aldo/keto reductase 2 family.
 
     0.425
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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