Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ping_1890PFAM: MscS Mechanosensitive ion channel; KEGG: pat:Patl_0259 MscS mechanosensitive ion channel. (284 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase (decarboxylating) alpha subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
    0.560
Ping_1737
KEGG: pat:Patl_2035 putative cytochrome c oxidase, subunit I.
  
     0.548
Ping_3091
PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_3323 protein of unknown function DUF1568.
  
     0.525
Ping_0052
PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_3323 protein of unknown function DUF1568.
  
     0.522
Ping_2307
PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_3323 protein of unknown function DUF1568.
  
     0.520
Ping_1823
KEGG: pat:Patl_3555 hypothetical protein.
  
     0.467
Ping_1734
PFAM: MscS Mechanosensitive ion channel; KEGG: pat:Patl_3399 MscS mechanosensitive ion channel.
 
  
 0.464
Ping_2650
KEGG: sdn:Sden_0766 ammonium transporter; TIGRFAM: PAS sensor protein; diguanylate cyclase; ammonium transporter; PFAM: GGDEF domain containing protein; EAL domain protein; Rh family protein/ammonium transporter; PAS fold domain protein; SMART: PAS domain containing protein; TC 1.A.11.
 
   
 0.435
Ping_2829
PFAM: MscS Mechanosensitive ion channel; KEGG: cps:CPS_1934 mechanosensitive ion channel family protein.
 
  
 0.425
Ping_0680
KEGG: ppr:PBPRA0701 putative type IV pilus assembly protein PilW.
  
     0.414
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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