STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1897PFAM: restriction modification system DNA specificity domain; KEGG: ecs:ECs5306 type I restriction-modification enzyme S subunit. (611 aa)    
Predicted Functional Partners:
Ping_1895
EcoEI R, C-terminal domain protein; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; EcoEI R, C-terminal domain protein; SMART: DEAD-like helicases-like; KEGG: sdn:Sden_1234 type III restriction enzyme, res subunit.
 
 
 0.893
Ping_0150
PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cch:Cag_0810 DEAD/DEAH box helicase-like.
 
 
 0.892
Ping_1898
KEGG: ppr:PBPRA0687 hypothetical protein.
  
    0.792
Ping_0149
PFAM: restriction modification system DNA specificity domain; KEGG: mma:MM3142 type I restriction-modification system specificity subunit.
  
   
 0.724
Ping_0238
PFAM: protein of unknown function DUF511; KEGG: rso:RSc0886 hypothetical protein.
  
    0.589
Ping_1899
KEGG: ppr:PBPRA0689 hypothetical protein.
  
    0.579
Ping_2523
PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: vch:VC0812 helicase-related protein; Belongs to the peptidase S24 family.
 
  
 0.578
Ping_2580
PFAM: Endonuclease I; KEGG: ppr:PBPRC0029 putative endonuclease I.
  
   
 0.427
Ping_2683
PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: ctc:CTC01910 DNA repair helicase rad25; Belongs to the peptidase S24 family.
 
  
 0.425
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.