STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1901SMART: metal-dependent phosphohydrolase, HD region; KEGG: pfl:PFL_4240 chemotaxis sensory transducer family protein. (962 aa)    
Predicted Functional Partners:
Ping_3424
KEGG: mag:amb3955 exopolyphosphatase-related protein.
  
     0.616
Ping_1840
PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; KEGG: dar:Daro_2045 CheB methylesterase:MCP methyltransferase, CheR-type.
   
   0.464
Ping_3128
PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; KEGG: dar:Daro_2045 CheB methylesterase:MCP methyltransferase, CheR-type.
   
   0.464
Ping_0840
PFAM: major facilitator superfamily MFS_1; KEGG: yps:YPTB2866 putative MFS family 3-phenylpropionic acid transporter.
  
     0.439
Ping_1627
PFAM: Rh family protein/ammonium transporter; KEGG: hch:HCH_02676 ammonia permease; TC 1.A.11.
  
     0.421
Ping_0289
PFAM: extracellular solute-binding protein, family 5; KEGG: pae:PA1810 putative peptide transport system substrate-binding protein.
  
     0.411
Ping_2411
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: pfl:PFL_4395 EAL domain/GGDEF domain protein.
 
 
 0.409
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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