Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ping_1914PFAM: protein of unknown function DUF490; KEGG: ppr:PBPRA0380 hypothetical protein. (1328 aa)    
Predicted Functional Partners:
Ping_1915
PFAM: surface antigen (D15); KEGG: pat:Patl_0260 surface antigen (D15).
 0.999
bamA
Surface antigen (D15); Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.680
asmA
PFAM: AsmA family protein; KEGG: son:SO2566 AsmA protein.
  
   
 0.572
Ping_0179
PFAM: SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: eca:ECA3587 putative membrane protein.
 
     0.569
Ping_3228
PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; KEGG: sdn:Sden_2972 protein of unknown function DUF335, SprT; Belongs to the SprT family.
  
     0.516
htpX
Heat shock protein, Metallo peptidase, MEROPS family M48B; PFAM: peptidase M48, Ste24p; HtpX domain protein; KEGG: pha:PSHAa1605 heat shock protein; Belongs to the peptidase M48B family.
 
     0.494
Ping_0009
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: vpa:VP2980 hypothetical protein.
  
     0.457
Ping_1167
KEGG: sbo:SBO_2540 hypothetical protein.
  
     0.451
Ping_3540
PFAM: protein of unknown function DUF479; KEGG: vpa:VPA0844 hypothetical protein.
  
     0.439
lolB
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
  
   
 0.413
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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