STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_2032PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_4912 membrane protein. (296 aa)    
Predicted Functional Partners:
Ping_2034
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: cps:CPS_4915 C4-dicarboxylate transporter family protein, DctQ subunit.
 
     0.855
Ping_2033
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: cps:CPS_4914 C4-dicarboxylate transporter family protein, DctM subunit.
 
    0.775
Ping_2031
PFAM: Asp/Glu racemase; KEGG: bcn:Bcen_6407 Asp/Glu racemase.
 
     0.710
Ping_2035
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: cps:CPS_4916 putative C4-dicarboxylate-binding periplasmic protein DctP.
 
     0.694
Ping_2846
PFAM: sulfotransferase; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cps:CPS_4327 TPR domain protein.
  
     0.518
Ping_2104
PFAM: UvrD/REP helicase; DNA topoisomerase, type IA, zn finger domain protein; KEGG: cps:CPS_2454 helicase IV.
  
     0.508
Ping_2125
KEGG: pcr:Pcryo_1812 hypothetical protein.
  
     0.461
Ping_1802
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: cps:CPS_0986 major facilitator family transporter.
  
     0.458
Ping_3425
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pub:SAR11_1297 glycine betaine/L-proline transport system permease.
  
    0.439
Ping_2845
PFAM: outer membrane efflux protein; KEGG: cps:CPS_4326 outer membrane efflux protein.
  
     0.435
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.