STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_2033TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: cps:CPS_4914 C4-dicarboxylate transporter family protein, DctM subunit. (445 aa)    
Predicted Functional Partners:
Ping_2034
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: cps:CPS_4915 C4-dicarboxylate transporter family protein, DctQ subunit.
 
 
 0.961
Ping_2035
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: cps:CPS_4916 putative C4-dicarboxylate-binding periplasmic protein DctP.
 
  
 0.909
Ping_2032
PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_4912 membrane protein.
 
    0.775
Ping_0135
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vpa:VPA1702 putative dicarboxylate-binding periplasmic protein.
 
  
 0.773
dctQ-4
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: ppr:PBPRB1878 putative small integral C4-dicarboxylate membrane transport protein.
 
 
 0.718
Ping_2031
PFAM: Asp/Glu racemase; KEGG: bcn:Bcen_6407 Asp/Glu racemase.
       0.572
Ping_0570
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vch:VC1273 extracellular solute-binding protein, family 7.
 
    0.522
Ping_2595
TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pat:Patl_0933 TRAP transporter, 4TM/12TM fusion protein.
  
     0.407
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.