STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_2073PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: vpa:VPA1111 putative glycine betaine-binding ABC transporter. (310 aa)    
Predicted Functional Partners:
Ping_2074
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_00853 ABC-type proline/glycine betaine transport system, permease component.
 
 0.999
Ping_0615
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vpa:VP1727 glycine betaine/L-proline transport system permease.
 
 0.997
Ping_2075
KEGG: hch:HCH_00854 ABC-type proline/glycine betaine transport system, ATPase component; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.996
Ping_0616
KEGG: vpa:VP1726 ABC superfamily (glycine/betaine/proline transport protein); TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase.
 
 0.986
Ping_3426
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pub:SAR11_1298 glycine betaine/L-proline transport ATP-binding protein.
 
 0.981
Ping_3425
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pub:SAR11_1297 glycine betaine/L-proline transport system permease.
 
 0.966
Ping_0614
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: vfi:VF0785 glycine betaine/L-proline-binding protein.
     
  0.900
Ping_3427
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pub:SAR11_1302 substrate-binding region of ABC-type glycine betaine transport system.
     
 
0.900
betI
Transcriptional regulator BetI; Repressor involved in choline regulation of the bet genes.
 
     0.768
Ping_2072
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
   
 0.733
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.