Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Ping_2128PFAM: aldehyde dehydrogenase; KEGG: pcr:Pcryo_1815 aldehyde dehydrogenase. (486 aa)    
Predicted Functional Partners:
Ping_2127
PFAM: peptidase M19, renal dipeptidase; KEGG: pcr:Pcryo_1814 peptidase M19, renal dipeptidase.
 
     0.776
Ping_2125
KEGG: pcr:Pcryo_1812 hypothetical protein.
 
     0.663
Ping_2604
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: bba:Bd1836 fatty oxidation complex, alpha subunit.
  
 0.563
Ping_2129
PFAM: Endoribonuclease L-PSP; KEGG: pcr:Pcryo_1816 Endoribonuclease L-PSP.
   
   0.524
Ping_2130
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pcr:Pcryo_1817 transcriptional regulator, LysR family.
 
     0.517
Ping_2126
PFAM: BCCT transporter; KEGG: pcr:Pcryo_1813 BCCT transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
 
  
 0.511
betI
Transcriptional regulator BetI; Repressor involved in choline regulation of the bet genes.
 
  
 0.428
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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