STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_2187C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A; KEGG: vvy:VV1647 periplasmic protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; Belongs to the peptidase S41A family. (664 aa)    
Predicted Functional Partners:
Ping_1499
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_03305 FOG: TPR repeat.
  
 
 0.907
Ping_2210
Protein containing tetratricopeptide (TPR) repeat; May be involved in cell division.
  
 
 
 0.900
proQ
ProQ activator of osmoprotectant transporter ProP; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.
 
  
 0.889
Ping_0958
PFAM: NLP/P60 protein; KEGG: vpa:VP1485 lipoprotein NlpC.
    
 
 0.829
Ping_3212
PFAM: peptidase M23B; KEGG: son:SO0048 peptidase, M23/M37 family.
  
  
 0.664
Ping_3241
N-acetylmuramoyl-L-alanine amidase; PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: ppr:PBPRA3353 putative N-acetylmuramoyl-L-alanine amidase.
  
  
 0.644
Ping_3376
TIGRFAM: oxaloacetate decarboxylase alpha subunit; PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; Conserved carboxylase region; KEGG: vpa:VP2544 oxaloacetate decarboxylase, alpha subunit.
  
    0.571
Ping_2846
PFAM: sulfotransferase; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cps:CPS_4327 TPR domain protein.
  
 
 0.545
Ping_2817
KEGG: pha:PSHAa0960 hypothetical protein.
  
 
 0.543
Ping_2969
Site-2 protease, Metallo peptidase, MEROPS family M50B; TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: sdn:Sden_1561 peptidase M50, putative membrane-associated zinc metallopeptidase.
 
  
 0.534
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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