STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_2230PFAM: protein of unknown function DUF34; KEGG: ppr:PBPRA1042 hypothetical protein. (251 aa)    
Predicted Functional Partners:
Ping_3548
PFAM: Allophanate hydrolase subunit 1; KEGG: ppr:PBPRA1282 hypothetical protein.
 
  
 0.871
Ping_3549
Urea amidolyase related protein; KEGG: vpa:VPA0875 putative carboxylase; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2.
 
  
 0.818
Ping_3547
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
    
 0.684
Ping_1811
S-adenosylmethionine-dependent methyltransferase; KEGG: vfi:VFA0955 hypothetical protein.
  
  
 0.642
Ping_2210
Protein containing tetratricopeptide (TPR) repeat; May be involved in cell division.
   
    0.593
Ping_2231
PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: Lantibiotic regulatory protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: vpa:VP0570 histidine protein kinase PhoR.
     
 0.550
Ping_2229
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family.
       0.499
Ping_0894
Xaa-His dipeptidase, Metallo peptidase, MEROPS family M20C; KEGG: vch:VC2279 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein.
  
    0.491
Ping_0046
PFAM: regulatory protein GntR, HTH; KEGG: csa:Csal_0157 transcriptional regulator, GntR family.
   
    0.469
Ping_0569
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: aci:ACIAD3447 putative transcriptional regulator (GntR family).
   
    0.469
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.