STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_2265PFAM: histidine triad (HIT) protein; KEGG: vch:VC1897 Hit family protein. (116 aa)    
Predicted Functional Partners:
Ping_3484
KEGG: vch:VC2746 glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp.
   
   0.840
Ping_2264
KEGG: abo:ABO_0071 hypothetical protein.
  
  
 0.706
Ping_2263
Conserved hypothetical protein; KEGG: cps:CPS_0598 putative lipoprotein.
       0.587
Ping_2266
KEGG: pat:Patl_3377 hypothetical protein.
       0.575
Ping_0902
PFAM: protein of unknown function DUF343; KEGG: ppr:PBPRA2383 hypothetical protein; Belongs to the UPF0434 family.
  
    0.435
cobB
5,6-dimethylbenzimidazole phosphoribosyltransferase; PFAM: Silent information regulator protein Sir2; KEGG: vch:VC1509 nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase; Belongs to the sirtuin family. Class III subfamily.
    
  0.429
Ping_1986
PFAM: protein of unknown function UPF0227; KEGG: vfi:VF1142 hypothetical protein.
  
  
 0.412
Ping_2267
PFAM: 37kDa nucleoid-associated protein; KEGG: vvy:VV1167 nucleoid-associated protein.
       0.401
udk
KEGG: son:SO2617 uridine kinase; TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase.
    
  0.400
Ping_3621
KEGG: bce:BC3046 uridine kinase.
    
  0.400
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.