STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_2369PFAM: protein of unknown function DUF58; KEGG: sdn:Sden_2349 protein of unknown function DUF58. (323 aa)    
Predicted Functional Partners:
Ping_2368
PFAM: transglutaminase domain protein; KEGG: psb:Psyr_2055 transglutaminase-like.
 
  
 0.977
Ping_2370
PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: sdn:Sden_2348 ATPase associated with various cellular activities, AAA_3.
  
 0.931
Ping_0077
PFAM: Peptidoglycan-binding LysM; KEGG: sfr:Sfri_0025 peptidoglycan-binding LysM.
 
     0.764
Ping_0159
PFAM: Fimbrial assembly family protein; KEGG: sfr:Sfri_0371 fimbrial assembly family protein.
 
     0.761
Ping_3254
KEGG: son:SO0853 pilin, putative.
  
     0.758
pilP
Type IV pilus biogenesis protein PilP; PFAM: Pilus assembly protein, PilQ; KEGG: sfr:Sfri_0373 pilus assembly protein, PilQ.
 
     0.757
pilO
PFAM: Pilus assembly protein, PilO; KEGG: sdn:Sden_0258 pilus assembly protein, PilO.
 
     0.753
Ping_3255
Hypothetical protein containing methylation site; KEGG: csa:Csal_0493 methylation.
  
     0.676
Ping_0162
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: sdn:Sden_0260 type II and III secretion system protein.
 
     0.650
Ping_0294
KEGG: tbd:Tbd_1865 pilus assembly protein.
  
     0.643
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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