STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ping_2375KEGG: vpa:VPA0133 putative ABC transporter substrate-binding protein. (312 aa)    
Predicted Functional Partners:
Ping_2376
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vpa:VPA0134 ABC transporter permease protein.
 0.999
Ping_2377
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vpa:VPA0135 putative ABC transporter, ATP-binding protein.
 
 0.998
Ping_2374
PFAM: TENA/THI-4 domain protein; KEGG: vpa:VPA0132 putative transcriptional activator.
 
  
 0.949
Ping_0049
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B0692 ABC taurine transporter, inner membrane subunit.
 
 
 0.890
Ping_2378
KEGG: vpa:VPA0136 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1.
 
     0.739
Ping_1007
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ppr:PBPRA0542 putative glutamate synthase, large subunit.
   
  
 0.556
Ping_3674
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rde:RD1_1477 hypothetical protein.
  
     0.526
Ping_3675
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rde:RD1_1478 C4-dicarboxylate transport system C4-dicarboxylate-binding protein, putative.
  
     0.505
thiM
Hydroxyethylthiazole kinase; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family.
     
 0.497
Ping_1026
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ppr:PBPRA2525 hypothetical nitrate reductase large subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
  
 0.459
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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