STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_2396Gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03; KEGG: vpa:VP3011 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase. (581 aa)    
Predicted Functional Partners:
gshB
KEGG: sdn:Sden_2975 glutathione synthetase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase domain protein; glutathione synthetase, ATP-binding; RimK domain protein ATP-grasp; Belongs to the prokaryotic GSH synthase family.
    
 0.923
Ping_0507
TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: pat:Patl_4206 glutathione-disulfide reductase.
     
 0.922
Ping_1235
PFAM: glutathionylspermidine synthase; CHAP domain containing protein; KEGG: pha:PSHAa2455 bifunctional: glutathionylspermidine amidase (N-terminal); glutathionylspermidine synthetase (C-terminal).
  
  
  0.914
pepA
Aminopeptidase A, Metallo peptidase, MEROPS family M17; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
     
 0.912
Ping_1331
Aminopeptidase B, Metallo peptidase, MEROPS family M17; Probably plays an important role in intracellular peptide degradation.
     
 0.912
gshA
TIGRFAM: glutamate--cysteine ligase; KEGG: ppr:PBPRA3047 putative glutamate-cysteine ligase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
    
 0.910
Ping_0894
Xaa-His dipeptidase, Metallo peptidase, MEROPS family M20C; KEGG: vch:VC2279 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein.
     
 0.908
Ping_2161
PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: xcb:XC_2820 glutathione S-transferase; Belongs to the GST superfamily.
    
 0.908
Ping_1007
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ppr:PBPRA0542 putative glutamate synthase, large subunit.
     
 0.904
Ping_1043
PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: vfi:VF1731 stringent starvation protein A.
     
 0.901
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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